NiNode::IsSplitMeshProxy now returns false if it is a skin influence.
NiTriShapeData::GetTriangles now only returns valid triangles.

ComplexShape::Split now cuts out weights below 0.1 and normalizes the result.
Fixed a bug which could cause NiSkinInstance to try to call a function on a NiNode that was in the midst of destruction.
Removed some cout statements.

Added NiGeometry::ApplyTransforms function to automatically zero out the transforms of a mesh and apply them to its vertices.
Added NiGeometryData::Transform function to apply an arbitrary transform to all vertices and normals of a mesh (used by above).
Added NiNode::PropagateTransform function to apply a NiNode's local transform to its children and then zero it out.
Fixed NiTriShapeData to properly set numTriangles when SetTriangles is called.
NiGeometry::BindSkin function now automatically propagates transforms of NiNodes between the root and the meshes and then applies those transforms to the vertices, making the NiSkinData overall transform unnecessary.
Removed "set root to scene root" option as it is no longer necessary.

Replaced _WRITE, _READ, _STRING, AND _FIXLINKS defines with the corresponding internal function call.
Replaced STANDARD_INTERNAL_FUNCTIONS with the internal function signatures.
Made my Doxygen config file use relative paths and added it to SVN so everyone can generate the same documentation for themselves.
Removed includes WZ added to ComplexShape.  These were not missing, they are up to the user to include if they wish.

Added support for sub version 4 headers, object storage, and link method.  Some objects like NiNodes already read correctly.

Fixed the relative include paths and tried to update solution, but havn't got the precompiled header working right.

Added != operator to Matrix44.
Added IsSplitMeshProxy function to NiNode.

The code I added to make NiTriBasedGeom select the correct skeleton root was wrong and has been re-written and tested.  It now seems to select the same skeleton root as real NIF files.
The NiTriBasedGeomData::SetUVSetCount function now sets the hasUVs bool value correctly.
Fixed some skin related bugs in ComplexSh::Split.

Removed code to re-position NiTriBasedGeom nodes as part of GoToSkeletonBindPosition since correct vertex positions can now be retrieved without doing this.

Finished Skin API except for NiSkinPartition.  Part of this was making NiSkinData read-only with a new interface.
Fixed a bug in the SubtractRef function.

Commented out functions written by Amorilia that I need to figure out how to fix.

Major update to python generation scripts and others.  Currently just namepace and mutable size members with appropriate generated code.

Removed some cout statements I had left behind.
Fixed problem with NiSkinInstance attaching itself to the skeleton root on load.
Increased debug limit on strings to 4000 to allow a particular Oblivion file to load.

GoToSkeletonBindPosition also works now as well.

Fix iterator issue with NiNode when clearing children and Clearing issue with NiObjectNET and controllers.

Connected parents in NiNode::FixLinks and removed NULL ones.

More functions implemented.  NiNode and NiObjectNET are now good examples of how to deal with pointers.
With implementation of NiNode::GetChildren function, I was able to re-enable the building up of the bind position.

Made all include paths relative so you don't have to set any directories to compile.  Hopefully Amorilia will fix this in the code generation script.
Implemented a few more functions.

Incorporated defines into the h and cpp files I'd already made for NiNode, NiObjectNET, and NiAVObject.

Noticed that I had forgot to include NiObject.cpp in my last commit... unfortunately I've already started splitting off classes into their own files so that's included in this commit as well.
I also noticed that I never implemented the member functions of Ref!  I still haven't, but I was just surprised it's been compiling without complaint.