Added NiGeometry::ApplyTransforms function to automatically zero out the transforms of a mesh and apply them to its vertices.
Added NiGeometryData::Transform function to apply an arbitrary transform to all vertices and normals of a mesh (used by above).
Added NiNode::PropagateTransform function to apply a NiNode's local transform to its children and then zero it out.
Fixed NiTriShapeData to properly set numTriangles when SetTriangles is called.
NiGeometry::BindSkin function now automatically propagates transforms of NiNodes between the root and the meshes and then applies those transforms to the vertices, making the NiSkinData overall transform unnecessary.
Removed "set root to scene root" option as it is no longer necessary.

Corrected Shape/particle hierarchy by adding NiGeometry and NiGeometryData.  This is the correct hierarchy and having particles come back as derived from NiTriBasedGeomData was causing problems.
Commented out printf commands in triangle stripper.

Replaced _WRITE, _READ, _STRING, AND _FIXLINKS defines with the corresponding internal function call.
Replaced STANDARD_INTERNAL_FUNCTIONS with the internal function signatures.
Made my Doxygen config file use relative paths and added it to SVN so everyone can generate the same documentation for themselves.
Removed includes WZ added to ComplexShape.  These were not missing, they are up to the user to include if they wish.

Added support for sub version 4 headers, object storage, and link method.  Some objects like NiNodes already read correctly.

Fixed the relative include paths and tried to update solution, but havn't got the precompiled header working right.

Casting functions now check for NULL as of last commit.

The code I added to make NiTriBasedGeom select the correct skeleton root was wrong and has been re-written and tested.  It now seems to select the same skeleton root as real NIF files.
The NiTriBasedGeomData::SetUVSetCount function now sets the hasUVs bool value correctly.
Fixed some skin related bugs in ComplexSh::Split.

Commented out functions written by Amorilia that I need to figure out how to fix.

Major update to python generation scripts and others.  Currently just namepace and mutable size members with appropriate generated code.

Implemented functions for NiTriShapeData and made old NiTriBasedGeomData functions work with the new system and removed the necessity to re-size the vertex count before setting new vertices.  NiTriBasedGeomData::SetVertices now simply clears out all other data.
Radius and Center functions should be removed from DocSys.

Made all include paths relative so you don't have to set any directories to compile.  Hopefully Amorilia will fix this in the code generation script.
Implemented a few more functions.